PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_200E79902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 441aa    MW: 50980.8 Da    PI: 8.1432
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_200E79902.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.99e-15111190190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            ++Yn Y+ e+GF +r  ks+++  +g   ++++ Cs+ gk+++ +++         ++rt+C a++++ +++d+ w++ + +  HnHe
  Traes_4AS_200E79902.1 111 DYYNLYSWECGFGIRYGKSRTN-VKGAKSMQELLCSCGGKPKKINSS---------SSRTECPAMIRLLRTEDDGWYICEYRVSHNHE 188
                            69****************9998.7777999**********9986555.........9******************************9 PP

                   FAR1  89 la 90 
                            + 
  Traes_4AS_200E79902.1 189 ML 190
                            85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-11111190IPR004330FAR1 DNA binding domain
PfamPF105515.1E-29312405IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAVKETRALS TVVEADEVDS SNASTEQHVS TVLDCESGQK SRTPSFIDVE RGNSGWVRRR  60
RHGAMPDERA ASADRISALE LAFRGFAERK GEAVVVPSMG LTFDSLGEAY DYYNLYSWEC  120
GFGIRYGKSR TNVKGAKSMQ ELLCSCGGKP KKINSSSSRT ECPAMIRLLR TEDDGWYICE  180
YRVSHNHEML HTYAQKLHFP SHRHIDKYTR ELVSRLRQNN VNLSKVYSII GTFFGRIENV  240
PFTKRCLRTL CAKLSRDQAD EDVKKTMDYF AELKQYDPEF TYTVRVDSES RVQTLIWTTG  300
KSKLQYHYFG DVITFDTTYR TNLYDMPFGL FVGVNNHFQS VIYAGVLMRD EKVETFNWVF  360
SEFVKLMGGK KTITILTDQA RAMEVAIEEV YPEATHRWCK WHVLKKAKES LGTLYNKRSE  420
FRDEFHKLIQ DMLTVEEFEK Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-157PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5DWD10.0W5DWD1_WHEAT; Uncharacterized protein
STRINGBRADI1G43906.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-50FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]